This list is missing the Vitality Shrine, which is at the top of the creature page, the adept list page, and the profile page.
The webcam capture page is also backed by flash currently.
When selecting an individual creature, the creature's full image is currently loaded via flash as well.
The device at Berserker’s Way is also a separate flash file if memory serves (given what it does and how it's loaded, I'd be utterly amazed if it wasn't).
The old homepage (as-in http://magicduel.com/) also uses flash in its left-side banner.
As a bit of clarification, what are you referring to wit